There have been issues of cronyism, nepotism, and corruption in the Ministry of Education, subject to performance audits focused on adherence to the Government’s procurement guidelines and contracts management. According to the opposition leader, the allegations are related to the misuse of public funds and to the “politically connected” persons who have been employed by the education ministry as advisers, “but are not doing any work”.

A former finance clerk is accused of embezzling $859,000 in funds that belonged to Esperanza High School’s student council. State auditors allegedly identified 270 checks made payable to the former finance clerk who oversaw the books while others were for two of the clerk’s relatives. According to the State auditors' bank records from 2005 to 2011, the total amount of embezzled funds is more than $1.5 million.

Sindh Anti-Corruption Establishment has found corruption and misuse of authority in Sindh Education Department district Jacobabad involving illegal inducting of hundreds of fake teachers, getting illegal financial benefits in the name of fake employees’ retirement, pension and death claims from department and life insurance company. The investigation continues after the fraud of millions of rupees has been reported, as well as the illegal role and abuse of authority from officers of the Education and Finance Departments.

A former Executive secretary of the Lagos State Scholarship Board has been charged with 8 counts of criminal conversion of N127 million belonging to the scholarship board. The Economic and Financial Crimes Commission’s report revealed that the funds meant for students’ scholarship payments, staff welfare and office renovation had been used for personal purposes.

The National Accountability Bureau has opened an investigation against the Higher Education Commission(HEC) Chairman for corruption, irregularities, mismanagement and appointment of consultants. Dozens of consultants were hired based on the high salaries of directors, some of whom were not only retired but also fresh graduates. According to University officials, the alleged HEC chairman was bullied for trying to mend a broken system.