A recent report from Public Accounts Committee reveals the theft of billions of taxpayers' money pocketed by corrupt officials and school heads. The Mundeku Secondary School is one of the 4 ghost schools in the Ministry records with 1,188 students used by an official to steal Sh27,329,598.95 from public funds. The report found another officer inflating enrolment data for 185 schools, resulting in the overpayment of Sh269, 254,288. The cases have been submitted to the Ethics and Anti-Corruption Commission for investigation.

The National Accountability Bureau has opened an investigation against the Higher Education Commission(HEC) Chairman for corruption, irregularities, mismanagement and appointment of consultants. Dozens of consultants were hired based on the high salaries of directors, some of whom were not only retired but also fresh graduates. According to University officials, the alleged HEC chairman was bullied for trying to mend a broken system.

In 2018 an audit conducted to review the Basic Education Community Schools program authorized by the Public Accounts Committee revealed over 2000 ghost schools on paper but no teacher on record. Several years have passed and new cases have been reported. Yet criminals continue to embezzle money to bribe government officials to allow fake teachers to keep fake jobs and usurp salaries of honest teachers and deserving students.

Investigations have been launched at the Ministry of Education after an audit revealed that the payroll system has been used illegally to increase the salaries of two employees. The first one, working in administrative affairs, received a bonus on her salary of 1,500 dinars per month from April 2019 to April 2020, and the second employee working in the private education department received a bonus of 800 dinars on her monthly salary from September 2019 to May 2020.