Two vice-chancellors and a former Rwandan prime minister were accused of nepotism and mismanagement of university finances. Three private universities were shut down by the Ministry of Education from 1 July 2020 after failing to meet education quality standards and to pay staff, despite strict rules for students who are required to pay fees before being admitted. The Higher Education Council will continue to evaluate institutions regularly and take action against universities with similar cases before schools reopen in September.

Over 100 students at the private KIM University in Kigali, Rwanda, have not been allowed to graduate in July 2021 after authorities detected that they had altered their grades in the university system. According to the Rwanda Bureau of Investigation, the suspects are accused of electronically falsifying documents and could face sentences of five to seven years in prison and fines ranging from 3 to 5 million Rwandan francs (about US$5,000).